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Home Pathology Portal Genetics and Genomics Advanced bioinformatics - from genomes to systems Uses of clinical and health data and information
Uses of clinical and health data and information
Pathology Portal

Integrating publications into bioinformatics analysis

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Research literature contains a wealth of information that can be extracted at scale using text-mining technologies. To make text-mining data available to a wider group of researchers, thepublications database, Europe PMC, provides access to millions of text-mined annotations, such as genes and proteins, metabolites, species, mutations, phosphorylations, interactions, associations, and many more.

This webinar will demonstrate how to access text-mined literature evidence programmatically, and how to supplement it with bibliographic information for advanced use cases. Two of such use cases, mapping of tropical disease research by author affiliation geoparsing and comparison of applicability of analytical chemistry techniques, will be introduced by invited speaker, Dr. Magnus Palmblad.

Who is this course for?

This webinar is aimed at individuals who wish to learn about accessing text-mined literature evidence programmatically. No prior knowledge of bioinformatics is required, butundergraduate level knowledge of biology would be useful.

  • Mariia Levchenko
    EMBL-EBI
  • Magnus Palmblad
    Leiden University Medical Center

Resource details

Contributed by: Pathology Portal
Authored by: Mariia Levchenko, The European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI).
Magnus Palmblad, The European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI)., Leiden University Medical Center
Licence: Creative Commons: Attribution-NonCommercial-NoDerivatives 4.0 International More information on licences
First contributed: 02 January 2023
Audience access level: Full user

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