NHS
Learning HubBeta

You have to be signed in to use this resource.

OpenAthens Log in

Forgotten username or password

Create new account

Home Pathology Portal Genetics and Genomics Application of genomics in infectious disease Role of genomics in: infectious disease diagnosis, prognosis, drug selection, resistance, monitoring, epidemic control and drug
Role of genomics in: infectious disease diagnosis, prognosis, drug selection, resistance, monitoring, epidemic control and drug
Pathology Portal

MGnify API: accessing microbiome data computationally

Not yet rated

This webinar will provide an overview of the MGnify API. MGnify offers an automated pipeline for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository.

The webinar will include how to utilise the API using a browser,where to find documentation,how to use filtering and pagination,available output formats,and scripting examples in Python.

Who is this course for?

This webinar is aimed at individuals who would like to learn more about using the MGnify API, however some familiarity with MGnify and programmatic access methods is recommended.

Outcomes

By the end of the webinar you will be able to:

  • Access the MGnify API
  • Find documentation for theMGnifyAPI

Speakers

  • Martin Beracochea
    EMBL-EBI

Resource details

Contributed by: Pathology Portal
Authored by: Martin Beracochea, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).
Licence: Creative Commons: Attribution-NonCommercial-NoDerivatives 4.0 International More information on licences
First contributed: 04 January 2023
Audience access level: Full user

Ratings

0 ratings

Not yet rated
5 star
0%
4 star
0%
3 star
0%
2 star
0%
1 star
0%
Report an issue with this resource

You may report a resource, for example, if there is an issue with copyright infringement, breach of personal data, factual inaccuracies, typing errors or safety concerns. The type of issue will determine whether the resource is immediately removed from the platform or if the contributor is asked to make amendments. You can report a resource from the resource information page or by contacting the Learning Hub support team.

You can contact the Learning Hub support team by completing the support form or if you have a general enquiry you can email enquiries@learninghub.nhs.uk.