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Home Pathology Portal Genetics and Genomics Bioinformatics, interpretation and data quality assurance in genome analysis Tools to call sequence variants, and annotate variant-call files using established resources.
Tools to call sequence variants, and annotate variant-call files using established resources.
Pathology Portal

BioSamples: a FAIR sample metadata archive

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BioSamplesis the EMBL-EBI archive which records and supplies metadata about biological samples and connects sample records across EBI databases to the corresponding experimental data. BioSamples aims to improve metadata quality through ontology annotation, metadata curation, data validation and certification.

In this webinar, we will briefly introduce BioSamples and highlight specific use cases from current collaborations and features deployed to increase FAIRness (Findability, Accessibility, Interoperability, Reusability) of the data.

Ongoing collaboration with major consortia rely on and drive addition of new features to BioSamples:

  • Ability to walk an ontology hierarchy such as disease for the Global Alliance for Genomics and Health (GA4GH)
  • Synthetic dataset and linking to human controlled access data for theCommon Infrastructure for National Cohorts in Europe, Canada, and Africa (CINECA)
  • Metrics and automated processes for FAIRplus

Outcomes

By the end of the webinar you will be able to:

  • Describe the role of BioSamples
  • Recall use cases that increase FAIRness of data

Speakers

  • Fuqi Xu
    EMBL-EBI

Resource details

Contributed by: Pathology Portal
Authored by: Fuqi Xu, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).
Licence: Creative Commons: Attribution-NonCommercial-NoDerivatives 4.0 International More information on licences
First contributed: 02 January 2023
Audience access level: Full user

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