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Home Pathology Portal Genetics and Genomics Bioinformatics, interpretation and data quality assurance in genome analysis
Bioinformatics, interpretation and data quality assurance in genome analysis
Pathology Portal

Use of multiple database sources

(for example, EVS, dbSNP, ClinVar etc.), data integration tools, clinical literature, and statistical evidence to prioritise variants for pathogenicity.

How to share text mining results in biology

Type: Web link
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Authored by Dayane Rodrigues Araujo, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI). - Aravind Venkatesan, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI). - Francesco Talo, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI). - Mahesh Prahladan, Pathology Portal

How to share text mining results in biology

Type: Web link
Not yet rated
Authored by Dayane Rodrigues Araujo, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI). - Aravind Venkatesan, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI). - Francesco Talo, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI). - Mahesh Prahladan, Pathology Portal

BioSamples: a FAIR sample metadata archive

Type: Video - 33 min 52 sec
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Authored by Fuqi Xu EMBL, European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI) - Mahesh Prahladan, Pathology Portal

BioStudies database: aggregating all outputs of a life sciences study

Type: Video - 33 min 50 sec
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Authored by Mahesh Prahladan, Pathology Portal in collaboration with the European Bioinformatics Institute's (EM

BioSamples: a FAIR sample metadata archive

Type: Video - 33 min 52 sec
Not yet rated
Authored by Mahesh Prahladan, Pathology Portal in collaboration with the European Bioinformatics Institute's (EM

Genomic features that regulate gene expression, with Ensembl

Type: Video - 42 min 46 sec
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Authored by Emily Perry, European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI)

Genome3D annotations in InterPro

Type: Video - 22 min 7 sec
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Authored by Typhaine Paysan-Lafosse, European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI)

Finding Pfam's protein families data in the InterPro website

Type: Video - 39 min
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Authored by Typhaine Paysan-Lafosse, European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI)

Exploring somatic mutations in cancer with the COSMIC database and analysis tools

Type: Video - 51 min 44 sec
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Authored by Ajay Mishra, European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI)

Methods in building and analysing biological networks

Type: Video - 1 hr 4 min
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Authored by Livia Perfetto, Human Technopole, Italy, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).

Introductory bioinformatics Q&A session: proteins and structures

Type: Video - 55 min 39 sec
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Authored by Emily Bowler-Barnett, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI). - Anna Swan, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI). - Deborah Harrus, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).

Introduction to the Complex Portal

Type: Video - 51 min 40 sec
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Authored by Birgit Meldal, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).

Introduction to exploring genome-phenome data with EGA

Type: Video - 31 min 52 sec
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Authored by Dona Shaju, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).

Introduction to PDBe programmatic access

Type: Video - 25 min 44 sec
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Authored by David Armstrong, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).

BioStudies database: aggregating all outputs of a life sciences study

Type: Video - 33 min 50 sec
Not yet rated
Authored by Ugis Sarkans, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).

European Nucleotide Archive: An introduction

Type: Video - 26 min 22 sec
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Authored by Sam Holt, EMBL-EBI, Speaker - Melissa Burke, EMBL-EBI, Organiser

Europe PMC: Programmatic access

Type: Video - 36 min 11 sec
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Authored by Dayane Rodrigues Araujo, EMBL-EBI, Speaker

Enzyme Portal

Type: Video - 22 min 39 sec
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Authored by Rossana Zaru, EMBL-EBI, Speaker - Joseph Sampson, EMBL-EBI, Speaker - Melissa Burke, EMBL-EBI, Organiser

Discovering scientific evidence using Europe PMC SciLite annotation

Type: Video - 22 min 19 sec
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Authored by Dayane Rodrigues Araujo, EMBL-EBI, Speaker - Ajay Mishra, EMBL-EBI, Organiser

Ensembl gene annotation for clinical genomics

Type: Video - 1 hr 7 min
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Authored by Emily Perry, EMBL-EBI, Speaker - Joannella Morales, EMBL-EBI, Speaker - Melissa Burke, EMBL-EBI, Organiser

Accessing InterPro programmatically

Type: Video - 50 min 53 sec
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Authored by Gustavo Salazar-Orejuela, The European Molecular Biology Laboratory-European Bioinformatics Institute's (EMBL-EBI).